Iridium in PDB 5kpy: Structure of A 5-Hydroxytryptophan Aptamer
Protein crystallography data
The structure of Structure of A 5-Hydroxytryptophan Aptamer, PDB code: 5kpy
was solved by
R.T.Batey,
E.Porter,
M.Merck,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
18.33 /
2.00
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
127.553,
26.594,
63.367,
90.00,
106.32,
90.00
|
|
R / Rfree (%)
|
21.7 /
25.8
|
Other elements in 5kpy:
The structure of Structure of A 5-Hydroxytryptophan Aptamer also contains other interesting chemical elements:
Iridium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iridium atom in the Structure of A 5-Hydroxytryptophan Aptamer
(pdb code 5kpy). This binding sites where shown within
5.0 Angstroms radius around Iridium atom.
In total 12 binding sites of Iridium where determined in the
Structure of A 5-Hydroxytryptophan Aptamer, PDB code: 5kpy:
Jump to Iridium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iridium binding site 1 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 1 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 1 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir102
b:97.6
occ:1.00
|
IR
|
A:IRI102
|
0.0
|
97.6
|
1.0
|
|
N1
|
A:IRI102
|
2.3
|
56.0
|
1.0
|
|
N6
|
A:IRI102
|
2.3
|
65.0
|
1.0
|
|
N2
|
A:IRI102
|
2.3
|
43.2
|
1.0
|
|
N4
|
A:IRI102
|
2.3
|
60.3
|
1.0
|
|
N5
|
A:IRI102
|
2.3
|
35.5
|
1.0
|
|
N3
|
A:IRI102
|
2.3
|
49.5
|
1.0
|
|
HN13
|
A:IRI102
|
2.7
|
67.2
|
1.0
|
|
HN11
|
A:IRI102
|
2.7
|
67.2
|
1.0
|
|
HN12
|
A:IRI102
|
2.7
|
67.2
|
1.0
|
|
HN22
|
A:IRI102
|
2.7
|
51.9
|
1.0
|
|
HN21
|
A:IRI102
|
2.7
|
51.9
|
1.0
|
|
HN23
|
A:IRI102
|
2.7
|
51.9
|
1.0
|
|
HN63
|
A:IRI102
|
2.7
|
78.0
|
1.0
|
|
HN62
|
A:IRI102
|
2.7
|
78.0
|
1.0
|
|
HN61
|
A:IRI102
|
2.7
|
78.0
|
1.0
|
|
HN42
|
A:IRI102
|
2.7
|
72.4
|
1.0
|
|
HN41
|
A:IRI102
|
2.7
|
72.4
|
1.0
|
|
HN43
|
A:IRI102
|
2.7
|
72.4
|
1.0
|
|
HN52
|
A:IRI102
|
2.7
|
42.6
|
1.0
|
|
HN53
|
A:IRI102
|
2.7
|
42.6
|
1.0
|
|
HN51
|
A:IRI102
|
2.7
|
42.6
|
1.0
|
|
HN32
|
A:IRI102
|
2.7
|
59.4
|
1.0
|
|
HN31
|
A:IRI102
|
2.7
|
59.4
|
1.0
|
|
HN33
|
A:IRI102
|
2.7
|
59.4
|
1.0
|
|
O
|
A:HOH242
|
4.0
|
25.2
|
0.8
|
|
O
|
A:HOH213
|
4.2
|
22.5
|
1.0
|
|
Iridium binding site 2 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 2 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 2 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir103
b:70.7
occ:1.00
|
IR
|
A:IRI103
|
0.0
|
70.7
|
1.0
|
|
N5
|
A:IRI103
|
2.3
|
42.8
|
1.0
|
|
N3
|
A:IRI103
|
2.3
|
44.9
|
1.0
|
|
N1
|
A:IRI103
|
2.3
|
47.9
|
1.0
|
|
N2
|
A:IRI103
|
2.3
|
48.2
|
1.0
|
|
N4
|
A:IRI103
|
2.3
|
44.7
|
1.0
|
|
N6
|
A:IRI103
|
2.3
|
45.2
|
1.0
|
|
HN53
|
A:IRI103
|
2.7
|
51.3
|
1.0
|
|
HN52
|
A:IRI103
|
2.7
|
51.3
|
1.0
|
|
HN51
|
A:IRI103
|
2.7
|
51.3
|
1.0
|
|
HN12
|
A:IRI103
|
2.7
|
57.4
|
1.0
|
|
HN31
|
A:IRI103
|
2.7
|
53.9
|
1.0
|
|
HN13
|
A:IRI103
|
2.7
|
57.4
|
1.0
|
|
HN11
|
A:IRI103
|
2.7
|
57.4
|
1.0
|
|
HN32
|
A:IRI103
|
2.7
|
53.9
|
1.0
|
|
HN33
|
A:IRI103
|
2.7
|
53.9
|
1.0
|
|
HN21
|
A:IRI103
|
2.7
|
57.9
|
1.0
|
|
HN23
|
A:IRI103
|
2.7
|
57.9
|
1.0
|
|
HN22
|
A:IRI103
|
2.7
|
57.9
|
1.0
|
|
HN41
|
A:IRI103
|
2.7
|
53.6
|
1.0
|
|
HN42
|
A:IRI103
|
2.7
|
53.6
|
1.0
|
|
HN43
|
A:IRI103
|
2.7
|
53.6
|
1.0
|
|
HN63
|
A:IRI103
|
2.7
|
54.3
|
1.0
|
|
HN62
|
A:IRI103
|
2.7
|
54.3
|
1.0
|
|
HN61
|
A:IRI103
|
2.7
|
54.3
|
1.0
|
|
O4
|
A:U81
|
4.4
|
38.3
|
1.0
|
|
O6
|
A:G14
|
4.4
|
41.9
|
1.0
|
|
O6
|
A:G80
|
4.9
|
35.1
|
1.0
|
|
Iridium binding site 3 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 3 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 3 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir104
b:55.1
occ:1.00
|
IR
|
A:IRI104
|
0.0
|
55.1
|
1.0
|
|
N4
|
A:IRI104
|
2.3
|
37.9
|
1.0
|
|
N5
|
A:IRI104
|
2.3
|
35.1
|
1.0
|
|
N3
|
A:IRI104
|
2.3
|
38.1
|
1.0
|
|
N6
|
A:IRI104
|
2.3
|
33.5
|
1.0
|
|
N1
|
A:IRI104
|
2.3
|
29.3
|
1.0
|
|
N2
|
A:IRI104
|
2.3
|
29.4
|
1.0
|
|
HN41
|
A:IRI104
|
2.7
|
45.5
|
1.0
|
|
HN43
|
A:IRI104
|
2.7
|
45.5
|
1.0
|
|
HN42
|
A:IRI104
|
2.7
|
45.5
|
1.0
|
|
HN53
|
A:IRI104
|
2.7
|
42.1
|
1.0
|
|
HN51
|
A:IRI104
|
2.7
|
42.1
|
1.0
|
|
HN52
|
A:IRI104
|
2.7
|
42.1
|
1.0
|
|
HN33
|
A:IRI104
|
2.7
|
45.7
|
1.0
|
|
HN31
|
A:IRI104
|
2.7
|
45.7
|
1.0
|
|
HN32
|
A:IRI104
|
2.7
|
45.7
|
1.0
|
|
HN61
|
A:IRI104
|
2.7
|
40.1
|
1.0
|
|
HN62
|
A:IRI104
|
2.7
|
40.1
|
1.0
|
|
HN63
|
A:IRI104
|
2.7
|
40.1
|
1.0
|
|
HN13
|
A:IRI104
|
2.7
|
35.1
|
1.0
|
|
HN12
|
A:IRI104
|
2.7
|
35.1
|
1.0
|
|
HN11
|
A:IRI104
|
2.7
|
35.1
|
1.0
|
|
HN23
|
A:IRI104
|
2.7
|
35.2
|
1.0
|
|
HN21
|
A:IRI104
|
2.7
|
35.2
|
1.0
|
|
HN22
|
A:IRI104
|
2.7
|
35.2
|
1.0
|
|
O2'
|
A:A21
|
4.4
|
23.6
|
1.0
|
|
O
|
A:HOH246
|
4.5
|
19.4
|
0.8
|
|
N3
|
A:A21
|
4.6
|
19.5
|
1.0
|
|
O3'
|
A:A21
|
4.8
|
21.6
|
1.0
|
|
OP2
|
A:U22
|
4.9
|
23.1
|
1.0
|
|
OP2
|
A:A73
|
4.9
|
19.7
|
1.0
|
|
Iridium binding site 4 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 4 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 4 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir105
b:34.0
occ:1.00
|
IR
|
A:IRI105
|
0.0
|
34.0
|
1.0
|
|
N2
|
A:IRI105
|
2.2
|
23.9
|
1.0
|
|
N4
|
A:IRI105
|
2.2
|
21.7
|
1.0
|
|
N1
|
A:IRI105
|
2.2
|
23.5
|
1.0
|
|
N3
|
A:IRI105
|
2.3
|
21.8
|
1.0
|
|
N6
|
A:IRI105
|
2.3
|
20.4
|
1.0
|
|
N5
|
A:IRI105
|
2.3
|
20.4
|
1.0
|
|
HN23
|
A:IRI105
|
2.7
|
28.7
|
1.0
|
|
HN21
|
A:IRI105
|
2.7
|
28.7
|
1.0
|
|
HN22
|
A:IRI105
|
2.7
|
28.7
|
1.0
|
|
HN43
|
A:IRI105
|
2.7
|
26.1
|
1.0
|
|
HN12
|
A:IRI105
|
2.7
|
28.2
|
1.0
|
|
HN11
|
A:IRI105
|
2.7
|
28.2
|
1.0
|
|
HN42
|
A:IRI105
|
2.7
|
26.1
|
1.0
|
|
HN13
|
A:IRI105
|
2.7
|
28.2
|
1.0
|
|
HN41
|
A:IRI105
|
2.7
|
26.1
|
1.0
|
|
HN32
|
A:IRI105
|
2.7
|
26.2
|
1.0
|
|
HN31
|
A:IRI105
|
2.7
|
26.2
|
1.0
|
|
HN33
|
A:IRI105
|
2.7
|
26.2
|
1.0
|
|
HN62
|
A:IRI105
|
2.7
|
24.4
|
1.0
|
|
HN61
|
A:IRI105
|
2.7
|
24.4
|
1.0
|
|
HN63
|
A:IRI105
|
2.7
|
24.4
|
1.0
|
|
HN51
|
A:IRI105
|
2.7
|
24.5
|
1.0
|
|
HN53
|
A:IRI105
|
2.7
|
24.5
|
1.0
|
|
HN52
|
A:IRI105
|
2.7
|
24.5
|
1.0
|
|
O
|
A:HOH218
|
3.4
|
20.3
|
0.9
|
|
O
|
A:HOH210
|
3.4
|
21.8
|
0.8
|
|
O6
|
A:G23
|
3.9
|
17.8
|
1.0
|
|
O4
|
A:U53
|
4.3
|
18.7
|
1.0
|
|
O2'
|
A:G55
|
4.8
|
16.1
|
1.0
|
|
O4'
|
A:A73
|
4.9
|
16.1
|
1.0
|
|
Iridium binding site 5 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 5 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 5 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir106
b:17.4
occ:1.00
|
IR
|
A:IRI106
|
0.0
|
17.4
|
1.0
|
|
N4
|
A:IRI106
|
2.2
|
18.2
|
1.0
|
|
N2
|
A:IRI106
|
2.2
|
16.8
|
1.0
|
|
N6
|
A:IRI106
|
2.2
|
15.2
|
1.0
|
|
N5
|
A:IRI106
|
2.2
|
16.5
|
1.0
|
|
N1
|
A:IRI106
|
2.3
|
13.8
|
1.0
|
|
N3
|
A:IRI106
|
2.3
|
15.6
|
1.0
|
|
HN41
|
A:IRI106
|
2.6
|
21.8
|
1.0
|
|
HN42
|
A:IRI106
|
2.6
|
21.8
|
1.0
|
|
HN43
|
A:IRI106
|
2.6
|
21.8
|
1.0
|
|
HN23
|
A:IRI106
|
2.6
|
20.2
|
1.0
|
|
HN22
|
A:IRI106
|
2.6
|
20.2
|
1.0
|
|
HN21
|
A:IRI106
|
2.6
|
20.2
|
1.0
|
|
HN61
|
A:IRI106
|
2.7
|
18.2
|
1.0
|
|
HN63
|
A:IRI106
|
2.7
|
18.2
|
1.0
|
|
HN62
|
A:IRI106
|
2.7
|
18.2
|
1.0
|
|
HN51
|
A:IRI106
|
2.7
|
19.8
|
1.0
|
|
HN53
|
A:IRI106
|
2.7
|
19.8
|
1.0
|
|
HN52
|
A:IRI106
|
2.7
|
19.8
|
1.0
|
|
HN11
|
A:IRI106
|
2.7
|
16.6
|
1.0
|
|
HN12
|
A:IRI106
|
2.7
|
16.6
|
1.0
|
|
HN13
|
A:IRI106
|
2.7
|
16.6
|
1.0
|
|
HN33
|
A:IRI106
|
2.7
|
18.7
|
1.0
|
|
HN32
|
A:IRI106
|
2.7
|
18.7
|
1.0
|
|
HN31
|
A:IRI106
|
2.7
|
18.7
|
1.0
|
|
O
|
A:HOH234
|
3.5
|
15.8
|
1.0
|
|
O
|
A:HOH245
|
3.5
|
18.1
|
0.8
|
|
O
|
A:HOH236
|
3.8
|
22.2
|
0.8
|
|
O2
|
A:U25
|
4.0
|
17.0
|
1.0
|
|
OXT
|
A:4PQ101
|
4.1
|
16.1
|
1.0
|
|
O2'
|
A:U45
|
4.1
|
18.7
|
1.0
|
|
O
|
A:HOH264
|
4.2
|
17.7
|
1.0
|
|
MG
|
A:MG119
|
4.3
|
25.6
|
1.0
|
|
O
|
A:HOH224
|
4.5
|
19.4
|
0.8
|
|
Iridium binding site 6 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 6 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 6 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir107
b:27.4
occ:1.00
|
IR
|
A:IRI107
|
0.0
|
27.4
|
1.0
|
|
N3
|
A:IRI107
|
2.2
|
21.6
|
1.0
|
|
N1
|
A:IRI107
|
2.2
|
25.2
|
1.0
|
|
N6
|
A:IRI107
|
2.3
|
24.0
|
1.0
|
|
N4
|
A:IRI107
|
2.3
|
20.4
|
1.0
|
|
N5
|
A:IRI107
|
2.3
|
23.7
|
1.0
|
|
N2
|
A:IRI107
|
2.3
|
25.1
|
1.0
|
|
HN33
|
A:IRI107
|
2.7
|
25.9
|
1.0
|
|
HN32
|
A:IRI107
|
2.7
|
25.9
|
1.0
|
|
HN31
|
A:IRI107
|
2.7
|
25.9
|
1.0
|
|
HN13
|
A:IRI107
|
2.7
|
30.3
|
1.0
|
|
HN12
|
A:IRI107
|
2.7
|
30.3
|
1.0
|
|
HN11
|
A:IRI107
|
2.7
|
30.3
|
1.0
|
|
HN61
|
A:IRI107
|
2.7
|
28.8
|
1.0
|
|
HN63
|
A:IRI107
|
2.7
|
28.8
|
1.0
|
|
HN62
|
A:IRI107
|
2.7
|
28.8
|
1.0
|
|
HN43
|
A:IRI107
|
2.7
|
24.4
|
1.0
|
|
HN41
|
A:IRI107
|
2.7
|
24.4
|
1.0
|
|
HN42
|
A:IRI107
|
2.7
|
24.4
|
1.0
|
|
HN53
|
A:IRI107
|
2.7
|
28.4
|
1.0
|
|
HN21
|
A:IRI107
|
2.7
|
30.1
|
1.0
|
|
HN51
|
A:IRI107
|
2.7
|
28.4
|
1.0
|
|
HN52
|
A:IRI107
|
2.7
|
28.4
|
1.0
|
|
HN23
|
A:IRI107
|
2.7
|
30.1
|
1.0
|
|
HN22
|
A:IRI107
|
2.7
|
30.1
|
1.0
|
|
OP2
|
A:C71
|
3.5
|
18.9
|
1.0
|
|
O4
|
A:U72
|
3.7
|
19.4
|
1.0
|
|
OP2
|
A:C70
|
3.9
|
17.4
|
1.0
|
|
OP1
|
A:C70
|
4.0
|
15.7
|
1.0
|
|
P
|
A:C70
|
4.4
|
19.4
|
1.0
|
|
O5'
|
A:C70
|
4.8
|
18.1
|
1.0
|
|
C4
|
A:U72
|
4.9
|
20.5
|
1.0
|
|
P
|
A:C71
|
5.0
|
17.6
|
1.0
|
|
Iridium binding site 7 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 7 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 7 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir108
b:23.9
occ:1.00
|
IR
|
A:IRI108
|
0.0
|
23.9
|
1.0
|
|
N3
|
A:IRI108
|
2.2
|
19.1
|
1.0
|
|
N2
|
A:IRI108
|
2.2
|
23.2
|
1.0
|
|
N4
|
A:IRI108
|
2.2
|
16.0
|
1.0
|
|
N1
|
A:IRI108
|
2.2
|
21.4
|
1.0
|
|
N5
|
A:IRI108
|
2.3
|
16.9
|
1.0
|
|
N6
|
A:IRI108
|
2.3
|
17.3
|
1.0
|
|
HN33
|
A:IRI108
|
2.7
|
22.9
|
1.0
|
|
HN31
|
A:IRI108
|
2.7
|
22.9
|
1.0
|
|
HN32
|
A:IRI108
|
2.7
|
22.9
|
1.0
|
|
HN21
|
A:IRI108
|
2.7
|
27.8
|
1.0
|
|
HN22
|
A:IRI108
|
2.7
|
27.8
|
1.0
|
|
HN23
|
A:IRI108
|
2.7
|
27.8
|
1.0
|
|
HN42
|
A:IRI108
|
2.7
|
19.2
|
1.0
|
|
HN41
|
A:IRI108
|
2.7
|
19.2
|
1.0
|
|
HN43
|
A:IRI108
|
2.7
|
19.2
|
1.0
|
|
HN13
|
A:IRI108
|
2.7
|
25.7
|
1.0
|
|
HN11
|
A:IRI108
|
2.7
|
25.7
|
1.0
|
|
HN12
|
A:IRI108
|
2.7
|
25.7
|
1.0
|
|
HN53
|
A:IRI108
|
2.7
|
20.2
|
1.0
|
|
HN51
|
A:IRI108
|
2.7
|
20.2
|
1.0
|
|
HN52
|
A:IRI108
|
2.7
|
20.2
|
1.0
|
|
HN61
|
A:IRI108
|
2.7
|
20.7
|
1.0
|
|
HN63
|
A:IRI108
|
2.7
|
20.7
|
1.0
|
|
HN62
|
A:IRI108
|
2.7
|
20.7
|
1.0
|
|
O
|
A:HOH206
|
3.2
|
22.4
|
1.0
|
|
O
|
A:HOH265
|
3.7
|
14.8
|
1.0
|
|
O
|
A:HOH254
|
3.9
|
17.9
|
0.8
|
|
O2'
|
A:A24
|
4.0
|
15.6
|
1.0
|
|
O
|
A:HOH260
|
4.5
|
15.4
|
0.9
|
|
O6
|
A:G52
|
4.5
|
16.6
|
1.0
|
|
O4
|
A:U54
|
4.8
|
18.2
|
1.0
|
|
O
|
A:HOH276
|
4.8
|
17.3
|
0.6
|
|
Iridium binding site 8 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 8 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 8 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir109
b:39.0
occ:1.00
|
IR
|
A:IRI109
|
0.0
|
39.0
|
1.0
|
|
N5
|
A:IRI109
|
2.2
|
32.3
|
1.0
|
|
N6
|
A:IRI109
|
2.3
|
35.1
|
1.0
|
|
N2
|
A:IRI109
|
2.3
|
35.9
|
1.0
|
|
N4
|
A:IRI109
|
2.3
|
35.7
|
1.0
|
|
N3
|
A:IRI109
|
2.3
|
37.2
|
1.0
|
|
N1
|
A:IRI109
|
2.3
|
28.8
|
1.0
|
|
HN53
|
A:IRI109
|
2.7
|
38.8
|
1.0
|
|
HN51
|
A:IRI109
|
2.7
|
38.8
|
1.0
|
|
HN52
|
A:IRI109
|
2.7
|
38.8
|
1.0
|
|
HN62
|
A:IRI109
|
2.7
|
42.1
|
1.0
|
|
HN63
|
A:IRI109
|
2.7
|
42.1
|
1.0
|
|
HN61
|
A:IRI109
|
2.7
|
42.1
|
1.0
|
|
HN21
|
A:IRI109
|
2.7
|
43.0
|
1.0
|
|
HN23
|
A:IRI109
|
2.7
|
43.0
|
1.0
|
|
HN22
|
A:IRI109
|
2.7
|
43.0
|
1.0
|
|
HN42
|
A:IRI109
|
2.7
|
42.8
|
1.0
|
|
HN43
|
A:IRI109
|
2.7
|
42.8
|
1.0
|
|
HN33
|
A:IRI109
|
2.7
|
44.7
|
1.0
|
|
HN31
|
A:IRI109
|
2.7
|
44.7
|
1.0
|
|
HN41
|
A:IRI109
|
2.7
|
42.8
|
1.0
|
|
HN32
|
A:IRI109
|
2.7
|
44.7
|
1.0
|
|
HN12
|
A:IRI109
|
2.7
|
34.5
|
1.0
|
|
HN11
|
A:IRI109
|
2.7
|
34.5
|
1.0
|
|
HN13
|
A:IRI109
|
2.7
|
34.5
|
1.0
|
|
O
|
A:HOH272
|
3.9
|
25.3
|
1.0
|
|
O6
|
A:G29
|
4.0
|
31.7
|
1.0
|
|
O
|
A:HOH278
|
4.2
|
27.5
|
0.8
|
|
N7
|
A:G29
|
4.3
|
30.2
|
1.0
|
|
O4
|
A:U30
|
4.7
|
34.5
|
1.0
|
|
C6
|
A:G29
|
4.8
|
31.7
|
1.0
|
|
O
|
A:HOH286
|
4.9
|
39.4
|
1.0
|
|
C5
|
A:G29
|
4.9
|
30.3
|
1.0
|
|
Iridium binding site 9 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 9 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 9 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir110
b:23.6
occ:1.00
|
IR
|
A:IRI110
|
0.0
|
23.6
|
1.0
|
|
N3
|
A:IRI110
|
2.2
|
22.1
|
1.0
|
|
N6
|
A:IRI110
|
2.2
|
22.7
|
1.0
|
|
N2
|
A:IRI110
|
2.2
|
28.5
|
1.0
|
|
N4
|
A:IRI110
|
2.2
|
18.6
|
1.0
|
|
N5
|
A:IRI110
|
2.2
|
23.1
|
1.0
|
|
N1
|
A:IRI110
|
2.3
|
20.9
|
1.0
|
|
HN31
|
A:IRI110
|
2.7
|
26.5
|
1.0
|
|
HN62
|
A:IRI110
|
2.7
|
27.2
|
1.0
|
|
HN63
|
A:IRI110
|
2.7
|
27.2
|
1.0
|
|
HN32
|
A:IRI110
|
2.7
|
26.5
|
1.0
|
|
HN33
|
A:IRI110
|
2.7
|
26.5
|
1.0
|
|
HN61
|
A:IRI110
|
2.7
|
27.2
|
1.0
|
|
HN21
|
A:IRI110
|
2.7
|
34.2
|
1.0
|
|
HN23
|
A:IRI110
|
2.7
|
34.2
|
1.0
|
|
HN22
|
A:IRI110
|
2.7
|
34.2
|
1.0
|
|
HN41
|
A:IRI110
|
2.7
|
22.3
|
1.0
|
|
HN43
|
A:IRI110
|
2.7
|
22.3
|
1.0
|
|
HN42
|
A:IRI110
|
2.7
|
22.3
|
1.0
|
|
HN51
|
A:IRI110
|
2.7
|
27.7
|
1.0
|
|
HN52
|
A:IRI110
|
2.7
|
27.7
|
1.0
|
|
HN53
|
A:IRI110
|
2.7
|
27.7
|
1.0
|
|
HN12
|
A:IRI110
|
2.7
|
25.0
|
1.0
|
|
HN11
|
A:IRI110
|
2.7
|
25.0
|
1.0
|
|
HN13
|
A:IRI110
|
2.7
|
25.0
|
1.0
|
|
O
|
A:HOH225
|
3.4
|
30.9
|
1.0
|
|
OP2
|
A:G55
|
3.9
|
20.9
|
1.0
|
|
O2
|
A:U54
|
4.0
|
17.2
|
1.0
|
|
OP2
|
A:A24
|
4.1
|
16.0
|
1.0
|
|
OP1
|
A:A40
|
4.4
|
35.5
|
1.0
|
|
OP2
|
A:A40
|
4.5
|
36.9
|
1.0
|
|
O2'
|
A:U54
|
4.6
|
19.7
|
1.0
|
|
OP1
|
A:A24
|
4.7
|
16.4
|
1.0
|
|
P
|
A:A40
|
4.8
|
38.0
|
1.0
|
|
P
|
A:A24
|
5.0
|
17.8
|
1.0
|
|
Iridium binding site 10 out
of 12 in 5kpy
Go back to
Iridium Binding Sites List in 5kpy
Iridium binding site 10 out
of 12 in the Structure of A 5-Hydroxytryptophan Aptamer
 Mono view
 Stereo pair view
|
|
A full contact list of Iridium with other atoms in the Ir binding
site number 10 of Structure of A 5-Hydroxytryptophan Aptamer within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir111
b:72.8
occ:1.00
|
IR
|
A:IRI111
|
0.0
|
72.8
|
1.0
|
|
N4
|
A:IRI111
|
2.3
|
46.7
|
1.0
|
|
N1
|
A:IRI111
|
2.3
|
39.7
|
1.0
|
|
N6
|
A:IRI111
|
2.3
|
44.3
|
1.0
|
|
N2
|
A:IRI111
|
2.3
|
46.7
|
1.0
|
|
N3
|
A:IRI111
|
2.3
|
49.9
|
1.0
|
|
N5
|
A:IRI111
|
2.3
|
56.7
|
1.0
|
|
HN43
|
A:IRI111
|
2.7
|
56.1
|
1.0
|
|
HN41
|
A:IRI111
|
2.7
|
56.1
|
1.0
|
|
HN42
|
A:IRI111
|
2.7
|
56.1
|
1.0
|
|
HN12
|
A:IRI111
|
2.7
|
47.6
|
1.0
|
|
HN11
|
A:IRI111
|
2.7
|
47.6
|
1.0
|
|
HN13
|
A:IRI111
|
2.7
|
47.6
|
1.0
|
|
HN63
|
A:IRI111
|
2.7
|
53.1
|
1.0
|
|
HN61
|
A:IRI111
|
2.7
|
53.1
|
1.0
|
|
HN62
|
A:IRI111
|
2.7
|
53.1
|
1.0
|
|
HN23
|
A:IRI111
|
2.7
|
56.0
|
1.0
|
|
HN22
|
A:IRI111
|
2.7
|
56.0
|
1.0
|
|
HN21
|
A:IRI111
|
2.7
|
56.0
|
1.0
|
|
HN31
|
A:IRI111
|
2.7
|
59.9
|
1.0
|
|
HN33
|
A:IRI111
|
2.7
|
59.9
|
1.0
|
|
HN32
|
A:IRI111
|
2.7
|
59.9
|
1.0
|
|
HN53
|
A:IRI111
|
2.7
|
68.1
|
1.0
|
|
HN52
|
A:IRI111
|
2.7
|
68.1
|
1.0
|
|
HN51
|
A:IRI111
|
2.7
|
68.1
|
1.0
|
|
N7
|
A:G38
|
4.3
|
38.2
|
1.0
|
|
OP2
|
A:G37
|
4.6
|
47.8
|
1.0
|
|
O6
|
A:G38
|
4.7
|
38.7
|
1.0
|
|
Reference:
E.B.Porter,
J.T.Polaski,
M.M.Morck,
R.T.Batey.
Recurrent Rna Motifs As Scaffolds For Genetically Encodable Small-Molecule Biosensors. Nat. Chem. Biol. V. 13 295 2017.
ISSN: ESSN 1552-4469
PubMed: 28092358
DOI: 10.1038/NCHEMBIO.2278
Page generated: Sun Dec 13 22:40:27 2020
|
