Atomistry » Iridium » PDB 5e1u-7onm » 7eem
Atomistry »
  Iridium »
    PDB 5e1u-7onm »
      7eem »

Iridium in PDB 7eem: Rna Bulged-G Motif

Protein crystallography data

The structure of Rna Bulged-G Motif, PDB code: 7eem was solved by J.Kondo, S.Sekiguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.66 / 2.59
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 25.132, 53.316, 105.639, 90, 90, 90
R / Rfree (%) 18 / 24.4

Iridium Binding Sites:

The binding sites of Iridium atom in the Rna Bulged-G Motif (pdb code 7eem). This binding sites where shown within 5.0 Angstroms radius around Iridium atom.
In total 6 binding sites of Iridium where determined in the Rna Bulged-G Motif, PDB code: 7eem:
Jump to Iridium binding site number: 1; 2; 3; 4; 5; 6;

Iridium binding site 1 out of 6 in 7eem

Go back to Iridium Binding Sites List in 7eem
Iridium binding site 1 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 1 of Rna Bulged-G Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir2701

b:105.6
occ:1.00
N7 A:G2659 4.0 6.6 1.0
OP2 A:C2658 4.5 27.5 1.0
O6 A:G2659 4.5 14.9 1.0
C5 A:G2659 4.9 13.6 1.0
C8 A:G2659 4.9 20.2 1.0

Iridium binding site 2 out of 6 in 7eem

Go back to Iridium Binding Sites List in 7eem
Iridium binding site 2 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 2 of Rna Bulged-G Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir2702

b:78.1
occ:1.00
OP1 A:C2658 4.1 25.7 1.0

Iridium binding site 3 out of 6 in 7eem

Go back to Iridium Binding Sites List in 7eem
Iridium binding site 3 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 3 of Rna Bulged-G Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir2703

b:142.4
occ:1.00
O6 A:G2661 3.9 18.3 1.0
O2' A:G2659 4.3 26.4 1.0
O3' A:G2659 4.9 29.6 1.0
C4' A:G2659 5.0 20.9 1.0
C6 A:G2661 5.0 14.3 1.0

Iridium binding site 4 out of 6 in 7eem

Go back to Iridium Binding Sites List in 7eem
Iridium binding site 4 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 4 of Rna Bulged-G Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir2704

b:98.1
occ:1.00
OP2 A:C2667 4.1 17.0 1.0
OP2 A:G2668 4.2 17.5 1.0
N7 A:G2668 4.2 13.3 1.0
O6 A:G2669 4.6 17.1 1.0
O6 A:G2668 4.7 11.0 1.0
P A:C2667 5.0 23.2 1.0

Iridium binding site 5 out of 6 in 7eem

Go back to Iridium Binding Sites List in 7eem
Iridium binding site 5 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 5 of Rna Bulged-G Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir2705

b:122.8
occ:1.00
OP2 A:G2655 4.1 23.3 1.0
O5' A:G2655 4.3 18.3 1.0
O3' A:A2654 4.6 17.8 1.0
O2' A:A2654 4.6 23.6 1.0
P A:G2655 4.7 40.6 1.0
OP1 A:C2652 4.9 21.3 1.0

Iridium binding site 6 out of 6 in 7eem

Go back to Iridium Binding Sites List in 7eem
Iridium binding site 6 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 6 of Rna Bulged-G Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir2706

b:228.2
occ:1.00
O4 A:U2672 4.3 30.5 1.0
N7 A:G2671 4.7 23.1 1.0

Reference:

J.Kondo, S.Sekiguchi. Rna Bulged-G Motif To Be Published.
Page generated: Wed Apr 5 09:34:18 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy