Iridium in PDB 7eem: Rna Bulged-G Motif

The structure of Rna Bulged-G Motif, PDB code: 7eem was solved by J.Kondo, S.Sekiguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.66 / 2.59
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	25.132, 53.316, 105.639, 90, 90, 90
R / Rfree (%)	18 / 24.4

The binding sites of Iridium atom in the Rna Bulged-G Motif (pdb code 7eem). This binding sites where shown within 5.0 Angstroms radius around Iridium atom.
In total 6 binding sites of Iridium where determined in the Rna Bulged-G Motif, PDB code: 7eem:
Jump to Iridium binding site number: 1; 2; 3; 4; 5; 6;

Iridium binding site 1 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 1 of Rna Bulged-G Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir2701 b:105.6 occ:1.00 N7 A:G2659 4.0 6.6 1.0 OP2 A:C2658 4.5 27.5 1.0 O6 A:G2659 4.5 14.9 1.0 C5 A:G2659 4.9 13.6 1.0 C8 A:G2659 4.9 20.2 1.0

Iridium binding site 2 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 2 of Rna Bulged-G Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir2702 b:78.1 occ:1.00 OP1 A:C2658 4.1 25.7 1.0

Iridium binding site 3 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 3 of Rna Bulged-G Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir2703 b:142.4 occ:1.00 O6 A:G2661 3.9 18.3 1.0 O2' A:G2659 4.3 26.4 1.0 O3' A:G2659 4.9 29.6 1.0 C4' A:G2659 5.0 20.9 1.0 C6 A:G2661 5.0 14.3 1.0

Iridium binding site 4 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 4 of Rna Bulged-G Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir2704 b:98.1 occ:1.00 OP2 A:C2667 4.1 17.0 1.0 OP2 A:G2668 4.2 17.5 1.0 N7 A:G2668 4.2 13.3 1.0 O6 A:G2669 4.6 17.1 1.0 O6 A:G2668 4.7 11.0 1.0 P A:C2667 5.0 23.2 1.0

Iridium binding site 5 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 5 of Rna Bulged-G Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir2705 b:122.8 occ:1.00 OP2 A:G2655 4.1 23.3 1.0 O5' A:G2655 4.3 18.3 1.0 O3' A:A2654 4.6 17.8 1.0 O2' A:A2654 4.6 23.6 1.0 P A:G2655 4.7 40.6 1.0 OP1 A:C2652 4.9 21.3 1.0

Iridium binding site 6 out of 6 in the Rna Bulged-G Motif


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 6 of Rna Bulged-G Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir2706 b:228.2 occ:1.00 O4 A:U2672 4.3 30.5 1.0 N7 A:G2671 4.7 23.1 1.0

J.Kondo, S.Sekiguchi. Rna Bulged-G Motif To Be Published.