Iridium in PDB 8aqy: Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation
Protein crystallography data
The structure of Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation, PDB code: 8aqy
was solved by
N.V.Igareta,
T.R.Ward,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.01 /
1.65
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
192.913,
57.846,
57.846,
90,
107.45,
90
|
R / Rfree (%)
|
16.9 /
20.1
|
Other elements in 8aqy:
The structure of Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation also contains other interesting chemical elements:
Iridium Binding Sites:
The binding sites of Iridium atom in the Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation
(pdb code 8aqy). This binding sites where shown within
5.0 Angstroms radius around Iridium atom.
In total 4 binding sites of Iridium where determined in the
Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation, PDB code: 8aqy:
Jump to Iridium binding site number:
1;
2;
3;
4;
Iridium binding site 1 out
of 4 in 8aqy
Go back to
Iridium Binding Sites List in 8aqy
Iridium binding site 1 out
of 4 in the Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation
Mono view
Stereo pair view
|
A full contact list of Iridium with other atoms in the Ir binding
site number 1 of Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ir201
b:32.4
occ:0.70
|
IR1
|
A:NOF201
|
0.0
|
32.4
|
0.7
|
N1
|
A:NOF201
|
2.1
|
36.4
|
1.0
|
N5
|
A:NOF201
|
2.1
|
42.1
|
1.0
|
C7
|
A:NOF201
|
2.2
|
38.2
|
0.7
|
C5
|
A:NOF201
|
2.2
|
37.5
|
0.7
|
C1
|
A:NOF201
|
2.3
|
38.9
|
0.7
|
C3
|
A:NOF201
|
2.3
|
38.6
|
0.7
|
C9
|
A:NOF201
|
2.3
|
36.4
|
0.7
|
CL46
|
A:NOF201
|
2.8
|
52.0
|
0.7
|
C12
|
A:NOF201
|
2.8
|
36.3
|
1.0
|
C11
|
A:NOF201
|
2.8
|
37.4
|
1.0
|
C30
|
A:NOF201
|
3.1
|
49.5
|
1.0
|
C6
|
A:NOF201
|
3.3
|
42.3
|
0.7
|
C8
|
A:NOF201
|
3.3
|
36.0
|
0.7
|
C18
|
A:NOF201
|
3.3
|
38.3
|
1.0
|
O3
|
A:NOF201
|
3.3
|
52.9
|
0.6
|
C4
|
A:NOF201
|
3.3
|
36.1
|
0.7
|
C10
|
A:NOF201
|
3.3
|
33.8
|
1.0
|
C2
|
A:NOF201
|
3.4
|
38.2
|
0.7
|
C6
|
C:NOF201
|
4.1
|
48.0
|
0.7
|
C33
|
A:NOF201
|
4.2
|
54.5
|
0.6
|
O4
|
A:NOF201
|
4.2
|
51.3
|
0.6
|
C14
|
A:NOF201
|
4.3
|
34.1
|
1.0
|
C13
|
A:NOF201
|
4.3
|
32.9
|
1.0
|
C19
|
A:NOF201
|
4.6
|
34.8
|
1.0
|
C31
|
A:NOF201
|
4.7
|
54.6
|
0.6
|
O
|
A:HOH374
|
4.8
|
29.1
|
1.0
|
C17
|
A:NOF201
|
5.0
|
33.9
|
1.0
|
|
Iridium binding site 2 out
of 4 in 8aqy
Go back to
Iridium Binding Sites List in 8aqy
Iridium binding site 2 out
of 4 in the Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation
Mono view
Stereo pair view
|
A full contact list of Iridium with other atoms in the Ir binding
site number 2 of Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ir201
b:33.9
occ:0.70
|
IR1
|
B:NOF201
|
0.0
|
33.9
|
0.7
|
N1
|
B:NOF201
|
2.1
|
38.9
|
1.0
|
N5
|
B:NOF201
|
2.1
|
42.9
|
1.0
|
C7
|
B:NOF201
|
2.2
|
40.2
|
0.7
|
C5
|
B:NOF201
|
2.2
|
39.3
|
0.7
|
C1
|
B:NOF201
|
2.3
|
41.2
|
0.7
|
C3
|
B:NOF201
|
2.3
|
41.1
|
0.7
|
C9
|
B:NOF201
|
2.3
|
37.8
|
0.7
|
CL46
|
B:NOF201
|
2.8
|
53.3
|
0.7
|
C12
|
B:NOF201
|
2.8
|
38.6
|
1.0
|
C11
|
B:NOF201
|
2.8
|
38.1
|
1.0
|
C30
|
B:NOF201
|
3.1
|
45.1
|
0.6
|
C6
|
B:NOF201
|
3.2
|
44.8
|
0.7
|
C18
|
B:NOF201
|
3.3
|
39.8
|
1.0
|
C8
|
B:NOF201
|
3.3
|
39.0
|
0.7
|
C4
|
B:NOF201
|
3.3
|
38.7
|
0.7
|
O4
|
B:NOF201
|
3.3
|
50.9
|
0.6
|
C10
|
B:NOF201
|
3.4
|
34.1
|
0.7
|
C2
|
B:NOF201
|
3.4
|
41.1
|
0.7
|
C8
|
D:NOF201
|
3.6
|
46.8
|
0.7
|
O3
|
B:NOF201
|
4.2
|
44.7
|
0.6
|
C14
|
B:NOF201
|
4.3
|
37.4
|
1.0
|
C13
|
B:NOF201
|
4.3
|
32.1
|
1.0
|
C19
|
B:NOF201
|
4.5
|
36.5
|
1.0
|
C31
|
B:NOF201
|
4.6
|
50.1
|
0.6
|
O3
|
D:NOF201
|
4.7
|
48.5
|
0.6
|
C32
|
B:NOF201
|
4.9
|
48.4
|
0.6
|
C17
|
B:NOF201
|
5.0
|
36.6
|
1.0
|
C33
|
B:NOF201
|
5.0
|
49.6
|
0.6
|
|
Iridium binding site 3 out
of 4 in 8aqy
Go back to
Iridium Binding Sites List in 8aqy
Iridium binding site 3 out
of 4 in the Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation
Mono view
Stereo pair view
|
A full contact list of Iridium with other atoms in the Ir binding
site number 3 of Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ir201
b:32.9
occ:0.70
|
IR1
|
C:NOF201
|
0.0
|
32.9
|
0.7
|
N5
|
C:NOF201
|
2.1
|
44.3
|
1.0
|
N1
|
C:NOF201
|
2.1
|
39.2
|
1.0
|
C5
|
C:NOF201
|
2.2
|
42.1
|
0.7
|
C7
|
C:NOF201
|
2.2
|
42.2
|
0.7
|
C3
|
C:NOF201
|
2.2
|
42.9
|
0.7
|
C1
|
C:NOF201
|
2.2
|
42.1
|
0.7
|
C9
|
C:NOF201
|
2.3
|
45.6
|
0.7
|
CL46
|
C:NOF201
|
2.8
|
54.1
|
0.7
|
C11
|
C:NOF201
|
2.8
|
40.0
|
1.0
|
C12
|
C:NOF201
|
2.8
|
38.7
|
1.0
|
C30
|
C:NOF201
|
3.1
|
45.8
|
0.6
|
C6
|
C:NOF201
|
3.2
|
48.0
|
0.7
|
C4
|
C:NOF201
|
3.3
|
40.1
|
0.7
|
C18
|
C:NOF201
|
3.3
|
36.5
|
1.0
|
C8
|
C:NOF201
|
3.3
|
44.3
|
0.7
|
C10
|
C:NOF201
|
3.3
|
44.6
|
0.7
|
C2
|
C:NOF201
|
3.4
|
42.1
|
0.7
|
O4
|
C:NOF201
|
3.4
|
53.1
|
0.6
|
C32
|
C:NOF201
|
3.9
|
52.0
|
0.6
|
C6
|
A:NOF201
|
4.0
|
42.3
|
0.7
|
O3
|
C:NOF201
|
4.2
|
45.7
|
0.6
|
C31
|
C:NOF201
|
4.2
|
52.0
|
0.6
|
C8
|
A:NOF201
|
4.3
|
36.0
|
0.7
|
C14
|
C:NOF201
|
4.3
|
37.3
|
1.0
|
C13
|
C:NOF201
|
4.3
|
34.3
|
1.0
|
C19
|
C:NOF201
|
4.6
|
35.2
|
1.0
|
O3
|
A:NOF201
|
4.9
|
52.9
|
0.6
|
C5
|
A:NOF201
|
4.9
|
37.5
|
0.7
|
C17
|
C:NOF201
|
5.0
|
34.5
|
1.0
|
|
Iridium binding site 4 out
of 4 in 8aqy
Go back to
Iridium Binding Sites List in 8aqy
Iridium binding site 4 out
of 4 in the Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation
Mono view
Stereo pair view
|
A full contact list of Iridium with other atoms in the Ir binding
site number 4 of Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ir201
b:31.5
occ:0.70
|
IR1
|
D:NOF201
|
0.0
|
31.5
|
0.7
|
N1
|
D:NOF201
|
2.1
|
37.3
|
1.0
|
N5
|
D:NOF201
|
2.1
|
42.5
|
1.0
|
C7
|
D:NOF201
|
2.2
|
39.1
|
0.7
|
C5
|
D:NOF201
|
2.2
|
40.5
|
0.7
|
C9
|
D:NOF201
|
2.2
|
38.8
|
0.7
|
C1
|
D:NOF201
|
2.3
|
43.4
|
0.7
|
C3
|
D:NOF201
|
2.3
|
40.5
|
0.7
|
CL46
|
D:NOF201
|
2.7
|
52.8
|
0.7
|
C11
|
D:NOF201
|
2.8
|
37.5
|
1.0
|
C12
|
D:NOF201
|
2.8
|
38.3
|
1.0
|
C30
|
D:NOF201
|
3.1
|
46.5
|
0.6
|
C8
|
D:NOF201
|
3.2
|
46.8
|
0.7
|
C6
|
D:NOF201
|
3.3
|
38.7
|
0.7
|
C18
|
D:NOF201
|
3.3
|
37.6
|
1.0
|
C10
|
D:NOF201
|
3.3
|
49.1
|
0.7
|
C2
|
D:NOF201
|
3.3
|
37.3
|
0.7
|
O3
|
D:NOF201
|
3.4
|
48.5
|
0.6
|
C4
|
D:NOF201
|
3.4
|
44.0
|
0.7
|
C33
|
D:NOF201
|
4.0
|
54.5
|
0.6
|
C6
|
B:NOF201
|
4.1
|
44.8
|
0.7
|
O4
|
D:NOF201
|
4.2
|
49.6
|
0.6
|
C14
|
D:NOF201
|
4.3
|
35.8
|
1.0
|
C13
|
D:NOF201
|
4.3
|
31.5
|
1.0
|
C8
|
B:NOF201
|
4.3
|
39.0
|
0.7
|
C19
|
D:NOF201
|
4.6
|
35.0
|
1.0
|
C31
|
D:NOF201
|
4.6
|
54.4
|
0.6
|
O
|
D:HOH370
|
4.9
|
30.7
|
1.0
|
C17
|
D:NOF201
|
5.0
|
33.4
|
1.0
|
|
Reference:
N.V.Igareta,
T.R.Ward.
Streptavidin Mutant S112A with An Iridium Catalyst For Ch Activation To Be Published.
Page generated: Mon Aug 12 03:52:59 2024
|