Iridium in PDB 8k0y: Crystal Structure of A Medaka Mascrna U23G

The structure of Crystal Structure of A Medaka Mascrna U23G, PDB code: 8k0y was solved by Y.He, J.Deng, X.Lin, L.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.08 / 2.28
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	159.36, 29.25, 98.08, 90, 118.56, 90
R / Rfree (%)	24.9 / 28.5

The structure of Crystal Structure of A Medaka Mascrna U23G also contains other interesting chemical elements:

Sodium

(Na)

13 atoms

The binding sites of Iridium atom in the Crystal Structure of A Medaka Mascrna U23G (pdb code 8k0y). This binding sites where shown within 5.0 Angstroms radius around Iridium atom.
In total 7 binding sites of Iridium where determined in the Crystal Structure of A Medaka Mascrna U23G, PDB code: 8k0y:
Jump to Iridium binding site number: 1; 2; 3; 4; 5; 6; 7;

Iridium binding site 1 out of 7 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 1 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir101 b:48.0 occ:0.53 O4 A:U48 4.0 56.9 1.0 O6 A:G7 4.3 54.2 1.0 N7 A:G7 4.5 59.0 1.0 N4 A:C6 4.9 57.9 1.0 C4 A:U48 5.0 65.3 1.0

Iridium binding site 2 out of 7 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 2 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir102 b:117.8 occ:0.77 O A:HOH202 2.7 51.1 1.0 O6 A:G52 3.8 54.6 1.0 O6 A:G51 3.9 51.7 1.0 N7 A:G51 4.4 69.8 1.0 C6 A:G51 4.7 59.1 1.0 O4 A:U53 4.7 68.5 1.0 N4 A:C5 4.8 53.4 1.0 C6 A:G52 4.8 52.7 1.0 C5 A:G51 4.9 53.9 1.0 N7 A:G52 5.0 57.3 1.0

Iridium binding site 3 out of 7 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 3 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir103 b:106.0 occ:0.55 O A:HOH201 2.5 67.5 1.0 O A:HOH207 2.6 69.3 1.0 O A:HOH206 2.9 47.4 1.0 N7 A:G36 3.8 73.3 1.0 O2' A:A42 4.4 91.0 1.0 OP2 A:G36 4.4 72.1 1.0 C8 A:G36 4.5 65.0 1.0 OP2 A:U43 4.8 89.8 1.0 C5 A:G36 4.8 58.1 1.0 O6 A:G36 4.8 49.6 1.0

Iridium binding site 4 out of 7 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 4 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir104 b:153.6 occ:0.78 O6 A:G31 4.4 100.2 1.0 O6 A:G30 4.5 109.6 1.0 N7 A:G30 4.8 116.0 1.0

Iridium binding site 5 out of 7 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 5 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range: probe atom residue distance (Å) B Occ B:Ir101 b:72.4 occ:0.62 O B:HOH201 2.4 48.2 1.0 O B:HOH203 2.5 71.9 1.0 O4 B:U48 3.9 62.0 1.0 O6 B:G7 4.4 62.6 1.0 N7 B:G7 4.5 61.6 1.0 N4 B:C6 4.9 67.8 1.0 C4 B:U48 5.0 57.5 1.0

Iridium binding site 6 out of 7 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 6 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range: probe atom residue distance (Å) B Occ B:Ir102 b:101.3 occ:0.62 O B:HOH207 2.3 36.2 1.0 O6 B:G52 3.6 74.8 1.0 O6 B:G51 3.9 75.0 1.0 N7 B:G51 4.2 62.3 1.0 O4 B:U53 4.3 69.1 1.0 C6 B:G51 4.5 69.1 1.0 N7 B:G52 4.6 86.8 1.0 C5 B:G51 4.6 69.9 1.0 C6 B:G52 4.7 65.5 1.0 N4 B:C5 4.9 55.8 1.0

Iridium binding site 7 out of 7 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 7 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range: probe atom residue distance (Å) B Occ B:Ir103 b:200.0 occ:1.00 O2 B:U43 3.5 115.5 1.0 O6 B:G11 3.6 87.8 1.0 OP1 B:G7 4.2 82.4 1.0 O4' B:U44 4.4 101.0 1.0 O4 B:U9 4.4 80.5 1.0 C6 B:G11 4.5 88.3 1.0 C2 B:U43 4.5 113.4 1.0 C5 B:U9 4.5 93.1 1.0 O6 B:G10 4.6 93.2 1.0 N7 B:G10 4.7 95.5 1.0 NA B:NA110 4.7 70.8 1.0 N3 B:U43 4.7 108.4 1.0 C4 B:U9 4.8 83.7 1.0 NA B:NA111 4.8 79.0 1.0 C4' B:U44 5.0 90.6 1.0

Y.He, J.Deng, X.Lin, L.Huang. Crystal Structure of Mascrna and Menrna To Be Published.