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Iridium in PDB 8ojx: Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination

Protein crystallography data

The structure of Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination, PDB code: 8ojx was solved by N.V.Igareta, T.R.Ward, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.04 / 1.60
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.552, 57.552, 183.993, 90, 90, 90
R / Rfree (%) 17.1 / 19.7

Other elements in 8ojx:

The structure of Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination also contains other interesting chemical elements:

Rhodium (Rh) 1 atom
Chlorine (Cl) 2 atoms

Iridium Binding Sites:

The binding sites of Iridium atom in the Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination (pdb code 8ojx). This binding sites where shown within 5.0 Angstroms radius around Iridium atom.
In total 3 binding sites of Iridium where determined in the Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination, PDB code: 8ojx:
Jump to Iridium binding site number: 1; 2; 3;

Iridium binding site 1 out of 3 in 8ojx

Go back to Iridium Binding Sites List in 8ojx
Iridium binding site 1 out of 3 in the Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 1 of Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir202

b:95.1
occ:0.70
HE2 A:HIS87 1.6 26.6 0.0
NE2 A:HIS87 2.4 26.6 1.0
CD2 A:HIS87 3.3 30.4 1.0
CE1 A:HIS87 3.3 31.5 1.0
HD2 A:HIS87 3.4 28.4 1.0
HE1 A:HIS87 3.5 29.2 1.0
CG A:HIS87 4.4 26.1 1.0
ND1 A:HIS87 4.4 27.1 1.0
O A:HOH347 4.6 52.8 1.0

Iridium binding site 2 out of 3 in 8ojx

Go back to Iridium Binding Sites List in 8ojx
Iridium binding site 2 out of 3 in the Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 2 of Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir203

b:45.1
occ:0.30
HE1 A:HIS127 1.8 30.7 1.0
CE1 A:HIS127 2.5 29.8 1.0
ND1 A:HIS127 3.3 31.1 1.0
HD1 A:HIS127 3.4 31.2 0.0
NE2 A:HIS127 3.5 32.3 1.0
O A:HOH368 3.6 32.3 1.0
HE2 A:HIS127 3.8 32.3 0.0
O A:HOH370 4.2 52.8 1.0
O A:HOH367 4.4 50.4 1.0
CG A:HIS127 4.5 24.9 1.0
CD2 A:HIS127 4.6 32.4 1.0
H A:HIS127 4.8 19.9 1.0
HA2 A:GLY126 4.9 19.3 1.0

Iridium binding site 3 out of 3 in 8ojx

Go back to Iridium Binding Sites List in 8ojx
Iridium binding site 3 out of 3 in the Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 3 of Streptavidin S112YK121E Artificial Metalloenzyme For Carboamination within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ir204

b:37.0
occ:0.45
HE2 A:HIS127 1.8 32.3 0.0
O A:HOH367 2.1 50.4 1.0
NE2 A:HIS127 2.5 32.3 1.0
HD2 A:HIS127 2.9 30.4 1.0
CD2 A:HIS127 3.0 32.4 1.0
O A:HOH320 3.5 27.7 1.0
O A:HOH370 3.7 52.8 1.0
CE1 A:HIS127 3.7 29.8 1.0
HE1 A:HIS127 4.1 30.7 1.0
CG A:HIS127 4.3 24.9 1.0
ND1 A:HIS127 4.6 31.1 1.0

Reference:

N.V.Igareta, N.V.Igareta, T.R.Ward. N/A N/A.
Page generated: Mon Aug 12 03:55:24 2024

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