Iridium in PDB 8f4o: Apo Structure of the Tpp Riboswitch Aptamer Domain

The structure of Apo Structure of the Tpp Riboswitch Aptamer Domain, PDB code: 8f4o was solved by H.-K.Lee, Y.-X.Wang, J.R.Stagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.58 / 3.10
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	139.264, 139.264, 97.905, 90, 90, 120
R / Rfree (%)	28.2 / 31.7

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 34;

Binding sites:

The binding sites of Iridium atom in the Apo Structure of the Tpp Riboswitch Aptamer Domain (pdb code 8f4o). This binding sites where shown within 5.0 Angstroms radius around Iridium atom.
In total 34 binding sites of Iridium where determined in the Apo Structure of the Tpp Riboswitch Aptamer Domain, PDB code: 8f4o:
Jump to Iridium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iridium binding site 1 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 1 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir101 b:131.9 occ:0.33 IR A:IRI101 0.0 131.9 0.3 HN22 A:IRI101 2.2 143.5 0.3 N2 A:IRI101 2.2 124.9 0.3 N6 A:IRI101 2.2 133.2 0.3 N1 A:IRI101 2.3 130.2 0.3 N5 A:IRI101 2.3 144.6 0.3 N3 A:IRI101 2.3 116.7 0.3 N4 A:IRI101 2.3 127.9 0.3 HN31 A:IRI101 2.4 140.0 0.3 HN32 A:IRI101 2.4 140.0 0.3 HN33 A:IRI101 2.4 140.0 0.3 HN12 A:IRI101 2.6 146.6 0.3 HN23 A:IRI101 2.7 143.5 0.3 N2 A:IRI101 2.8 119.6 0.3 HN13 A:IRI101 2.8 146.6 0.3 HN21 A:IRI101 2.8 149.9 0.3 HN23 A:IRI101 2.8 149.9 0.3 HN22 A:IRI101 2.8 149.9 0.3 HN63 A:IRI101 2.8 159.8 0.3 HN61 A:IRI101 2.8 159.8 0.3 HN62 A:IRI101 2.8 159.8 0.3 HN11 A:IRI101 2.8 156.3 0.3 HN13 A:IRI101 2.8 156.3 0.3 HN12 A:IRI101 2.8 156.3 0.3 HN52 A:IRI101 2.8 173.6 0.3 HN51 A:IRI101 2.8 173.6 0.3 HN53 A:IRI101 2.8 173.6 0.3 HN43 A:IRI101 2.8 153.5 0.3 HN41 A:IRI101 2.8 153.5 0.3 HN42 A:IRI101 2.8 153.5 0.3 N1 A:IRI101 3.0 122.2 0.3 HN21 A:IRI101 3.5 143.5 0.3 HN53 A:IRI101 3.7 157.2 0.3 HN11 A:IRI101 3.8 146.6 0.3 IR A:IRI101 4.0 118.9 0.3 N5 A:IRI101 4.2 131.0 0.3 O6 A:G17 4.5 117.2 1.0 HN51 A:IRI101 4.6 157.2 0.3 HN63 A:IRI101 4.7 141.1 0.3 N7 A:G16 4.8 164.0 1.0 HN52 A:IRI101 4.8 157.2 0.3 N7 A:G17 4.9 136.2 1.0 O6 A:G16 4.9 150.3 1.0 H41 A:C48 4.9 131.0 1.0 N6 A:IRI101 4.9 117.6 0.3

Iridium binding site 2 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 2 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir101 b:118.9 occ:0.29 IR A:IRI101 0.0 118.9 0.3 HN31 A:IRI101 1.7 140.0 0.3 HN21 A:IRI101 2.2 147.3 0.4 N2 A:IRI101 2.2 119.6 0.3 N6 A:IRI101 2.2 117.6 0.3 N1 A:IRI101 2.3 122.2 0.3 N5 A:IRI101 2.3 131.0 0.3 N4 A:IRI101 2.3 118.0 0.3 N3 A:IRI101 2.3 118.2 0.3 N3 A:IRI101 2.3 116.7 0.3 HN31 A:IRI101 2.4 141.9 0.3 HN32 A:IRI101 2.4 141.9 0.3 HN33 A:IRI101 2.4 141.9 0.3 HN33 A:IRI101 2.5 140.0 0.3 HN41 A:IRI101 2.7 153.5 0.3 HN22 A:IRI101 2.8 143.5 0.3 HN23 A:IRI101 2.8 143.5 0.3 HN21 A:IRI101 2.8 143.5 0.3 HN63 A:IRI101 2.8 141.1 0.3 HN61 A:IRI101 2.8 141.1 0.3 HN62 A:IRI101 2.8 141.1 0.3 HN11 A:IRI101 2.8 146.6 0.3 HN13 A:IRI101 2.8 146.6 0.3 HN12 A:IRI101 2.8 146.6 0.3 HN53 A:IRI101 2.8 157.2 0.3 HN51 A:IRI101 2.8 157.2 0.3 HN52 A:IRI101 2.8 157.2 0.3 HN43 A:IRI101 2.8 141.6 0.3 HN41 A:IRI101 2.8 141.6 0.3 HN42 A:IRI101 2.8 141.6 0.3 HN22 A:IRI101 2.8 147.3 0.4 N2 A:IRI101 2.9 122.8 0.4 HN11 A:IRI101 2.9 138.6 0.4 HN32 A:IRI101 2.9 140.0 0.3 HN63 A:IRI101 3.4 125.5 0.4 N4 A:IRI101 3.4 127.9 0.3 HN23 A:IRI101 3.5 147.3 0.4 N1 A:IRI101 3.5 115.5 0.4 HN13 A:IRI101 3.6 138.6 0.4 HN43 A:IRI101 3.8 153.5 0.3 IR A:IRI101 4.0 131.9 0.3 HN42 A:IRI101 4.0 153.5 0.3 N6 A:IRI101 4.0 104.6 0.4 IR A:IRI101 4.2 129.4 0.4 HN51 A:IRI101 4.2 173.6 0.3 HN12 A:IRI101 4.2 138.6 0.4 HN61 A:IRI101 4.4 159.8 0.3 O6 A:G18 4.4 106.6 1.0 N5 A:IRI101 4.5 144.6 0.3 HN61 A:IRI101 4.5 125.5 0.4 HN62 A:IRI101 4.5 125.5 0.4 N6 A:IRI101 4.6 133.2 0.3 N7 A:G18 4.6 122.7 1.0 HN53 A:IRI101 4.8 173.6 0.3 HN63 A:IRI101 4.8 159.8 0.3 H62 A:A47 4.9 156.3 1.0

Iridium binding site 3 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 3 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir101 b:129.4 occ:0.38 IR A:IRI101 0.0 129.4 0.4 N2 A:IRI101 2.2 122.8 0.4 N6 A:IRI101 2.2 104.6 0.4 N1 A:IRI101 2.3 115.5 0.4 N5 A:IRI101 2.3 111.0 0.4 N4 A:IRI101 2.3 93.3 0.4 N3 A:IRI101 2.3 118.8 0.4 HN42 A:IRI101 2.3 141.6 0.3 HN33 A:IRI101 2.4 142.6 0.4 HN32 A:IRI101 2.4 142.6 0.4 HN31 A:IRI101 2.4 142.6 0.4 HN31 A:IRI101 2.8 141.9 0.3 HN21 A:IRI101 2.8 147.3 0.4 HN23 A:IRI101 2.8 147.3 0.4 HN22 A:IRI101 2.8 147.3 0.4 HN63 A:IRI101 2.8 125.5 0.4 HN62 A:IRI101 2.8 125.5 0.4 HN61 A:IRI101 2.8 125.5 0.4 HN41 A:IRI101 2.8 141.6 0.3 HN11 A:IRI101 2.8 138.6 0.4 HN13 A:IRI101 2.8 138.6 0.4 HN12 A:IRI101 2.8 138.6 0.4 HN51 A:IRI101 2.8 133.2 0.4 HN53 A:IRI101 2.8 133.2 0.4 HN52 A:IRI101 2.8 133.2 0.4 HN42 A:IRI101 2.8 111.9 0.4 HN43 A:IRI101 2.8 111.9 0.4 HN41 A:IRI101 2.8 111.9 0.4 N4 A:IRI101 2.9 118.0 0.3 HN61 A:IRI101 3.3 141.1 0.3 HN62 A:IRI101 3.4 141.1 0.3 HN43 A:IRI101 3.6 141.6 0.3 N3 A:IRI101 3.6 118.2 0.3 N6 A:IRI101 3.6 117.6 0.3 HN33 A:IRI101 4.1 141.9 0.3 HN32 A:IRI101 4.1 141.9 0.3 IR A:IRI101 4.2 118.9 0.3 HN63 A:IRI101 4.4 141.1 0.3 O4 A:U20 4.5 94.6 1.0 N7 A:G19 4.7 97.3 1.0 O6 A:G19 4.8 85.0 1.0 N7 A:G18 4.8 122.7 1.0 H61 A:A45 4.9 157.6 1.0

Iridium binding site 4 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 4 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir102 b:133.5 occ:0.37 IR A:IRI102 0.0 133.5 0.4 N2 A:IRI102 2.2 160.2 0.4 N6 A:IRI102 2.2 133.4 0.4 N1 A:IRI102 2.3 155.5 0.4 N5 A:IRI102 2.3 171.3 0.4 N4 A:IRI102 2.3 132.1 0.4 N3 A:IRI102 2.3 174.7 0.4 HN32 A:IRI102 2.4 209.7 0.4 HN33 A:IRI102 2.4 209.7 0.4 HN31 A:IRI102 2.4 209.7 0.4 HN22 A:IRI102 2.8 192.2 0.4 HN23 A:IRI102 2.8 192.2 0.4 HN62 A:IRI102 2.8 160.2 0.4 HN21 A:IRI102 2.8 192.2 0.4 HN61 A:IRI102 2.8 160.2 0.4 HN63 A:IRI102 2.8 160.2 0.4 HN11 A:IRI102 2.8 186.6 0.4 HN13 A:IRI102 2.8 186.6 0.4 HN12 A:IRI102 2.8 186.6 0.4 HN51 A:IRI102 2.8 205.6 0.4 HN52 A:IRI102 2.8 205.6 0.4 HN53 A:IRI102 2.8 205.6 0.4 HN41 A:IRI102 2.8 158.6 0.4 HN42 A:IRI102 2.8 158.6 0.4 HN43 A:IRI102 2.8 158.6 0.4 N7 A:G86 4.8 225.7 1.0 O6 A:G86 4.8 213.2 1.0

Iridium binding site 5 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 5 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir103 b:111.9 occ:0.41 IR A:IRI103 0.0 111.9 0.4 HN12 A:IRI103 1.5 145.6 0.6 N1 A:IRI103 1.7 121.3 0.6 HN11 A:IRI103 1.7 145.6 0.6 HN63 A:IRI103 2.2 138.0 0.6 N2 A:IRI103 2.2 119.1 0.4 N6 A:IRI103 2.2 113.2 0.4 N1 A:IRI103 2.3 120.2 0.4 N5 A:IRI103 2.3 118.4 0.4 N4 A:IRI103 2.3 138.1 0.4 N3 A:IRI103 2.3 108.1 0.4 N6 A:IRI103 2.4 115.0 0.6 HN32 A:IRI103 2.4 129.7 0.4 HN31 A:IRI103 2.4 129.7 0.4 HN33 A:IRI103 2.4 129.7 0.4 HN42 A:IRI103 2.5 171.8 0.6 HN13 A:IRI103 2.5 145.6 0.6 IR A:IRI103 2.5 102.5 0.6 HN61 A:IRI103 2.6 138.0 0.6 N4 A:IRI103 2.7 143.2 0.6 HN23 A:IRI103 2.8 142.9 0.4 HN22 A:IRI103 2.8 142.9 0.4 HN21 A:IRI103 2.8 142.9 0.4 HN61 A:IRI103 2.8 135.9 0.4 HN63 A:IRI103 2.8 135.9 0.4 HN62 A:IRI103 2.8 135.9 0.4 HN13 A:IRI103 2.8 144.2 0.4 HN11 A:IRI103 2.8 144.2 0.4 HN12 A:IRI103 2.8 144.2 0.4 HN52 A:IRI103 2.8 142.1 0.4 HN51 A:IRI103 2.8 142.1 0.4 HN53 A:IRI103 2.8 142.1 0.4 HN41 A:IRI103 2.8 165.7 0.4 HN43 A:IRI103 2.8 165.7 0.4 HN42 A:IRI103 2.8 165.7 0.4 HN41 A:IRI103 3.2 171.8 0.6 HN62 A:IRI103 3.2 138.0 0.6 HN43 A:IRI103 3.5 171.8 0.6 O4 B:U79 3.6 124.1 1.0 H21 B:G78 3.9 160.0 1.0 N2 A:IRI103 4.0 103.3 0.6 HN22 A:IRI103 4.0 124.0 0.6 N5 A:IRI103 4.2 118.1 0.6 HN53 A:IRI103 4.3 141.7 0.6 HN32 A:IRI103 4.3 129.6 0.6 HN23 A:IRI103 4.4 124.0 0.6 H1 B:G78 4.5 129.9 1.0 N3 A:IRI103 4.5 108.0 0.6 H41 B:C77 4.6 166.6 1.0 C4 B:U79 4.7 126.3 1.0 N2 B:G78 4.7 133.3 1.0 HN33 A:IRI103 4.7 129.6 0.6 HN21 A:IRI103 4.7 124.0 0.6 HN31 A:IRI103 4.8 129.6 0.6 HN51 A:IRI103 4.8 141.7 0.6 HN52 A:IRI103 4.9 141.7 0.6 OP2 A:C74 4.9 113.8 1.0 O6 A:G76 5.0 111.5 0.6 HN32 A:IRI117 5.0 234.3 1.0

Iridium binding site 6 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 6 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir103 b:102.5 occ:0.59 IR A:IRI103 0.0 102.5 0.6 HN31 A:IRI103 0.4 129.7 0.4 N3 A:IRI103 0.6 108.1 0.4 HN32 A:IRI103 1.1 129.7 0.4 HN33 A:IRI103 1.3 129.7 0.4 N2 A:IRI103 2.2 103.3 0.6 N6 A:IRI103 2.2 115.0 0.6 N5 A:IRI103 2.3 118.1 0.6 N1 A:IRI103 2.3 121.3 0.6 N3 A:IRI103 2.3 108.0 0.6 N4 A:IRI103 2.3 143.2 0.6 HN31 A:IRI103 2.4 129.6 0.6 HN33 A:IRI103 2.4 129.6 0.6 HN32 A:IRI103 2.4 129.6 0.6 IR A:IRI103 2.5 111.9 0.4 HN23 A:IRI103 2.8 124.0 0.6 HN21 A:IRI103 2.8 124.0 0.6 HN22 A:IRI103 2.8 124.0 0.6 HN63 A:IRI103 2.8 138.0 0.6 HN61 A:IRI103 2.8 138.0 0.6 HN62 A:IRI103 2.8 138.0 0.6 HN51 A:IRI103 2.8 142.1 0.4 HN11 A:IRI103 2.8 145.6 0.6 HN12 A:IRI103 2.8 145.6 0.6 HN13 A:IRI103 2.8 145.6 0.6 HN52 A:IRI103 2.8 141.7 0.6 HN51 A:IRI103 2.8 141.7 0.6 HN53 A:IRI103 2.8 141.7 0.6 HN43 A:IRI103 2.8 171.8 0.6 HN41 A:IRI103 2.8 171.8 0.6 HN42 A:IRI103 2.8 171.8 0.6 N5 A:IRI103 3.0 118.4 0.4 HN21 A:IRI103 3.3 142.9 0.4 HN41 A:IRI103 3.3 165.7 0.4 N2 A:IRI103 3.4 119.1 0.4 N4 A:IRI103 3.4 138.1 0.4 HN52 A:IRI103 3.5 142.1 0.4 OP2 A:A75 3.6 137.6 1.0 HN61 A:IRI103 3.6 135.9 0.4 N6 A:IRI103 3.7 113.2 0.4 HN53 A:IRI103 3.8 142.1 0.4 HN23 A:IRI103 3.9 142.9 0.4 HN42 A:IRI103 4.0 165.7 0.4 O4 B:U79 4.0 124.1 1.0 OP2 A:C74 4.1 113.8 1.0 HN43 A:IRI103 4.1 165.7 0.4 O6 A:G76 4.1 111.5 0.6 HN22 A:IRI103 4.2 142.9 0.4 H5 A:C74 4.3 163.3 1.0 HN63 A:IRI103 4.3 135.9 0.4 HN62 A:IRI103 4.4 135.9 0.4 H3' A:C74 4.7 153.0 1.0 N7 A:A75 4.7 134.0 1.0 N7 A:G76 4.7 124.7 0.6 C5 A:C74 4.7 136.1 1.0 N1 A:IRI103 4.8 120.2 0.4 H6 A:C74 4.8 147.8 1.0 H3 B:U79 4.9 150.7 1.0 O5' A:C74 4.9 94.3 1.0 H62 A:A75 4.9 141.0 1.0 P A:C74 5.0 113.7 1.0

Iridium binding site 7 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 7 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir104 b:159.7 occ:0.33 IR A:IRI104 0.0 159.7 0.3 HN61 A:IRI104 0.8 140.7 0.7 N6 A:IRI104 1.5 117.3 0.7 HN63 A:IRI104 1.5 140.7 0.7 HN62 A:IRI104 1.8 140.7 0.7 N2 A:IRI104 2.2 113.1 0.3 N6 A:IRI104 2.2 101.7 0.3 N3 A:IRI104 2.3 104.0 0.3 N5 A:IRI104 2.3 120.7 0.3 N1 A:IRI104 2.3 113.5 0.3 N4 A:IRI104 2.3 119.4 0.3 HN32 A:IRI104 2.4 124.8 0.3 HN33 A:IRI104 2.4 124.8 0.3 HN31 A:IRI104 2.4 124.8 0.3 HN63 A:IRI104 2.8 122.0 0.3 HN62 A:IRI104 2.8 122.0 0.3 HN61 A:IRI104 2.8 122.0 0.3 HN21 A:IRI104 2.8 135.8 0.3 HN23 A:IRI104 2.8 135.8 0.3 HN22 A:IRI104 2.8 135.8 0.3 HN12 A:IRI104 2.8 136.2 0.3 HN11 A:IRI104 2.8 136.2 0.3 HN13 A:IRI104 2.8 136.2 0.3 HN51 A:IRI104 2.8 144.8 0.3 HN42 A:IRI104 2.8 143.2 0.3 HN52 A:IRI104 2.8 144.8 0.3 HN41 A:IRI104 2.8 143.2 0.3 HN53 A:IRI104 2.8 144.8 0.3 HN43 A:IRI104 2.8 143.2 0.3 HN41 A:IRI104 3.3 159.7 0.7 IR A:IRI104 3.5 137.1 0.7 HN31 A:IRI104 3.5 129.8 0.7 N4 A:IRI104 3.6 133.1 0.7 HN42 A:IRI104 3.8 159.7 0.7 HN12 A:IRI104 4.0 107.4 0.7 N1 A:IRI104 4.1 89.5 0.7 OP1 A:C38 4.1 116.1 1.0 N3 A:IRI104 4.2 108.1 0.7 HN11 A:IRI104 4.2 107.4 0.7 OP2 A:U39 4.3 93.3 1.0 HN32 A:IRI104 4.4 129.8 0.7 HN43 A:IRI104 4.4 159.7 0.7 HN21 A:IRI104 4.5 123.1 0.7 N2 A:IRI104 4.6 102.6 0.7 HN33 A:IRI104 4.8 129.8 0.7 OP1 A:U39 5.0 100.0 1.0

Iridium binding site 8 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 8 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir104 b:137.1 occ:0.67 IR A:IRI104 0.0 137.1 0.7 HN51 A:IRI104 2.1 144.8 0.3 HN21 A:IRI104 2.1 135.8 0.3 N2 A:IRI104 2.2 102.6 0.7 N6 A:IRI104 2.2 117.3 0.7 HN52 A:IRI104 2.3 144.8 0.3 N1 A:IRI104 2.3 89.5 0.7 N3 A:IRI104 2.3 108.1 0.7 N4 A:IRI104 2.3 133.1 0.7 N5 A:IRI104 2.3 121.7 0.7 HN32 A:IRI104 2.4 129.8 0.7 HN31 A:IRI104 2.4 129.8 0.7 HN33 A:IRI104 2.4 129.8 0.7 N5 A:IRI104 2.5 120.7 0.3 N2 A:IRI104 2.6 113.1 0.3 HN22 A:IRI104 2.6 135.8 0.3 HN22 A:IRI104 2.8 123.1 0.7 HN23 A:IRI104 2.8 123.1 0.7 HN21 A:IRI104 2.8 123.1 0.7 HN61 A:IRI104 2.8 140.7 0.7 HN62 A:IRI104 2.8 140.7 0.7 HN63 A:IRI104 2.8 140.7 0.7 HN11 A:IRI104 2.8 107.4 0.7 HN12 A:IRI104 2.8 107.4 0.7 HN13 A:IRI104 2.8 107.4 0.7 HN43 A:IRI104 2.8 159.7 0.7 HN42 A:IRI104 2.8 159.7 0.7 HN41 A:IRI104 2.8 159.7 0.7 HN51 A:IRI104 2.8 146.1 0.7 HN52 A:IRI104 2.8 146.1 0.7 HN53 A:IRI104 2.8 146.1 0.7 OP2 A:U39 3.2 93.3 1.0 HN53 A:IRI104 3.2 144.8 0.3 HN31 A:IRI104 3.2 124.8 0.3 HN23 A:IRI104 3.4 135.8 0.3 IR A:IRI104 3.5 159.7 0.3 N3 A:IRI104 3.8 104.0 0.3 HN32 A:IRI104 3.8 124.8 0.3 N7 A:G40 4.2 101.7 1.0 P A:U39 4.2 70.6 1.0 OP1 A:U39 4.4 100.0 1.0 HN11 A:IRI104 4.4 136.2 0.3 OP2 A:G40 4.4 111.9 1.0 H8 A:G40 4.4 100.7 1.0 HN33 A:IRI104 4.5 124.8 0.3 N1 A:IRI104 4.6 113.5 0.3 O5' A:U39 4.6 98.2 1.0 C8 A:G40 4.7 83.9 1.0 HN13 A:IRI107 4.9 107.4 0.7

Iridium binding site 9 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 9 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir105 b:166.7 occ:0.67 IR A:IRI105 0.0 166.7 0.7 N2 A:IRI105 2.2 187.4 0.7 N6 A:IRI105 2.2 168.7 0.7 N4 A:IRI105 2.3 176.0 0.7 N1 A:IRI105 2.3 196.7 0.7 N5 A:IRI105 2.3 215.7 0.7 N3 A:IRI105 2.3 203.9 0.7 HN32 A:IRI105 2.4 244.7 0.7 HN33 A:IRI105 2.4 244.7 0.7 HN31 A:IRI105 2.4 244.7 0.7 HN23 A:IRI105 2.8 224.9 0.7 HN22 A:IRI105 2.8 224.9 0.7 HN21 A:IRI105 2.8 224.9 0.7 HN61 A:IRI105 2.8 202.4 0.7 HN63 A:IRI105 2.8 202.4 0.7 HN62 A:IRI105 2.8 202.4 0.7 HN13 A:IRI105 2.8 236.0 0.7 HN11 A:IRI105 2.8 236.0 0.7 HN12 A:IRI105 2.8 236.0 0.7 HN43 A:IRI105 2.8 211.2 0.7 HN42 A:IRI105 2.8 211.2 0.7 HN41 A:IRI105 2.8 211.2 0.7 HN51 A:IRI105 2.8 258.8 0.7 HN52 A:IRI105 2.8 258.8 0.7 HN53 A:IRI105 2.8 258.8 0.7 H2 A:PGE118 3.8 192.2 1.0 N7 A:G33 4.5 191.6 1.0 H3 A:PGE118 4.5 210.3 1.0 O4' A:U32 4.7 228.7 1.0 O6 A:G33 4.8 169.9 1.0 H4' A:U32 4.8 276.2 1.0 C2 A:PGE118 4.9 160.2 1.0 H62 A:A34 4.9 193.9 1.0 H5'' A:U32 4.9 291.0 1.0 H52 A:PGE118 4.9 151.2 1.0

Iridium binding site 10 out of 34 in the Apo Structure of the Tpp Riboswitch Aptamer Domain


Mono view


Stereo pair view

A full contact list of Iridium with other atoms in the Ir binding site number 10 of Apo Structure of the Tpp Riboswitch Aptamer Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ir106 b:105.1 occ:0.26 IR A:IRI106 0.0 105.1 0.3 N2 A:IRI106 2.2 118.2 0.3 N5 A:IRI106 2.2 119.7 0.3 N6 A:IRI106 2.2 122.0 0.3 N1 A:IRI106 2.3 96.5 0.3 N3 A:IRI106 2.3 115.1 0.3 N4 A:IRI106 2.3 95.1 0.3 HN31 A:IRI106 2.4 138.2 0.3 HN32 A:IRI106 2.4 138.2 0.3 HN33 A:IRI106 2.4 138.2 0.3 HN23 A:IRI106 2.8 141.8 0.3 HN22 A:IRI106 2.8 141.8 0.3 HN21 A:IRI106 2.8 141.8 0.3 HN61 A:IRI106 2.8 146.4 0.3 HN63 A:IRI106 2.8 146.4 0.3 HN62 A:IRI106 2.8 146.4 0.3 HN53 A:IRI106 2.8 143.7 0.3 HN51 A:IRI106 2.8 143.7 0.3 HN52 A:IRI106 2.8 143.7 0.3 HN13 A:IRI106 2.8 115.8 0.3 HN12 A:IRI106 2.8 115.8 0.3 HN11 A:IRI106 2.8 115.8 0.3 HN43 A:IRI106 2.8 114.2 0.3 HN41 A:IRI106 2.8 114.2 0.3 HN42 A:IRI106 2.8 114.2 0.3 N3 A:IRI107 3.5 84.0 0.7 HN31 A:IRI107 3.5 100.8 0.7 HN32 A:IRI107 3.6 100.8 0.7 HN33 A:IRI107 3.7 100.8 0.7 OP1 A:A44 3.7 126.8 1.0 OP1 A:A43 3.9 74.5 1.0 H5'' A:A44 4.0 137.1 1.0 H5' A:A44 4.3 137.1 1.0 H5' A:A45 4.4 167.4 1.0 HN51 A:IRI113 4.6 159.9 1.0 C5' A:A44 4.6 114.3 1.0 H3' A:A43 4.9 126.9 1.0 H4' A:A45 4.9 148.8 1.0

H.-K.Lee, Y.-X.Wang, J.R.Stagno. Apo Structure of the Tpp Riboswitch Aptamer Domain To Be Published.